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Курс Bioinformatics Algorithms (Part 2)
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Interactive Textbook accompanying https://www.coursera.org/course/bioinformatics2.

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Задачи с кодом в курсе «Bioinformatics Algorithms (Part 2)»Количество задач с кодом 51
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Содержание курса

Разделы в курсе «Bioinformatics Algorithms (Part 2)» 12 разделов Уроки в курсе «Bioinformatics Algorithms (Part 2)» 66 уроков Тесты в курсе «Bioinformatics Algorithms (Part 2)» 5 тестов Задачи в курсе «Bioinformatics Algorithms (Part 2)» 51 задача Время прохождения курса «Bioinformatics Algorithms (Part 2)» 62 ч. Последнее обновление курса «Bioinformatics Algorithms (Part 2)» обн. 4 года назад

How Do We Locate Disease-Causing Mutations? (Week 1/3)

11 уроков
1. What Causes Ohdo Syndrome? ↗
2. Introduction to Multiple Pattern Matching ↗
3. Herding Patterns into a Trie ↗
4. Preprocessing the Genome Instead ↗
5. Suffix Trees ↗
6. CS: Constructing a Suffix Tree ↗
7. CS: Maximal Non-Branching Paths in a Graph ↗
8. CS: Solving the Longest Shared Substring Problem ↗
9. Detour: The Reference Human Genome ↗
10. Detour: Rearrangements, Insertions, & Deletions in Human Genomes ↗
11. Detour: The Aho-Corasick Algorithm ↗

How Do We Locate Disease-Causing Mutations? (Week 2/3)

6 уроков
1. Suffix Arrays ↗
2. The Burrows-Wheeler Transform ↗
3. A First Attempt at Inverting the Burrows-Wheeler Transform ↗
4. The First-Last Property and Burrows-Wheeler Inversion ↗
5. Pattern Matching with the Burrows-Wheeler Transform ↗
6. Detour: Suffix Arrays and Suffix Trees ↗

How Do We Locate Disease-Causing Mutations? (Week 3/3)

5 уроков
1. Speeding Up Burrows-Wheeler Pattern Matching ↗
2. Where are the Matched Patterns? ↗
3. Burrows and Wheeler Set Up Checkpoints ↗
4. Epilogue: Mismatch-Tolerant Read Mapping ↗
5. CS: Partial Suffix Array Construction ↗

Which Animal Gave Us SARS? (Week 1/3)

9 уроков
1. The Fastest Outbreak ↗
2. Transforming Distance Matrices into Evolutionary Trees ↗
3. Toward An Algorithm for Distance-Based Phylogeny Construction ↗
4. Additive Phylogeny ↗
5. Detour: When Did HIV Jump from Primates to Humans? ↗
6. Detour: An Introduction to Graphs ↗
7. Detour: Searching for a Tree Fitting a Distance Matrix ↗
8. Detour: The Four Point Condition ↗
9. Detour: Did Bats Give Us SARS? ↗

Which Animal Gave Us SARS? (Week 2/3)

5 уроков
1. Using Least Squares to Construct Approximate Phylogenies ↗
2. Ultrametric Evolutionary Trees ↗
3. The Neighbor-Joining Algorithm ↗
4. Detour: Why Does the Neighbor-Joining Algorithm Work? ↗
5. Detour: Computing Limb Lengths in the Neighbor-Joining Algorithm ↗

Which Animal Gave Us SARS? (Week 3/3)

6 уроков
1. Character-Based Tree Reconstruction ↗
2. The Small Parsimony Problem ↗
3. The Large Parsimony Problem ↗
4. Epilogue: Evolutionary Trees Fight Crime ↗
5. Detour: Giant Panda: Bear or Raccoon? ↗
6. Detour: Where Did Humans Come From? ↗

How Did Yeast Become a Wine-Maker? (Week 1/2)

12 уроков
1. An Evolutionary History of Wine-Making ↗
2. Identifying Genes Responsible for the Diauxic Shift ↗
3. Introduction to Clustering ↗
4. The Good Clustering Principle ↗
5. Clustering as an Optimization Problem ↗
6. Farthest First Traversal ↗
7. k-Means Clustering ↗
8. The Lloyd Algorithm ↗
9. Clustering Genes Implicated in the Diauxic Shift ↗
10. Detour: Measuring Gene Expression ↗
11. Detour: Microarrays ↗
12. Detour: Proof of the Center of Gravity Theorem ↗

How Did Yeast Become a Wine-Maker? (Week 2/2)

8 уроков
1. Limitations of k-means Clustering ↗
2. From Coin Flipping to k-Means Clustering ↗
3. Making Soft Decisions in Coin Flipping ↗
4. Soft k-Means Clustering ↗
5. Hierarchical Clustering ↗
6. Epilogue: Clustering Tumor Samples ↗
7. Detour: Gene Expression Matrix to a Distance/Similarity Matrix ↗
8. Detour: Clustering and Corrupted Cliques ↗

Why Have Biologists Still Not Developed an HIV Vaccine? (Wk 1/2)

1 урок
1. Hidden Markov Models Code Challenges (Week 1) ↗

Why Have Biologists Still Not Developed an HIV Vaccine? (Wk 2/2)

1 урок
1. Hidden Markov Models Code Challenges (Week 2) ↗

Was T. rex Just a Big Chicken? (Week 1/2)

1 урок
1. Proteomics Code Challenges Week 1 ↗

Was T. rex Just a Big Chicken? (Week 2/2)

1 урок
1. Proteomics Code Challenges Week 2 ↗